2PHC Structural Genomics, Unknown Function date Apr 10, 2007
title Crystal Structure Of Conserved Uncharacterized Protein Ph098 Pyrococcus Horikoshii
authors J.T.Swindell Ii, L.Chen, J.Zhu, A.Ebihara, A.Shinkai, S.Kuramitsu S.Yokoyama, Z.Q.Fu, J.Chrzas, J.P.Rose, B.C.Wang, Southeast Collaboratory For Structural Genomics (Secsg), Riken Structu Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Uncharacterized Protein Ph0987
Chain: B
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Gene: Ph0987
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril-X
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 61
R_factor 0.239 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.848 105.848 51.869 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.29 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2phc.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2PHC
  • Likely Quarternary Molecular Structure file(s) for 2PHC
  • Structure Factors (107 Kb)
  • Retrieve 2PHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PHC from S2C, [Save to disk]
  • Re-refined 2phc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PHC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2phc_B] [2phc]
  • SWISS-PROT database: [O58715]
  • Domain organization of [O58715_PYRHO] by SWISSPFAM
  • Domain found in 2PHC: [AHS1 ] by SMART
  • Other resources with information on 2PHC
  • Community annotation for 2PHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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