2POY Isomerase Immunosuppressant date Apr 27, 2007
title Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis- Isomerase Cgd2_4120 In Complex With Cyclosporin A
authors A.K.Wernimont, J.Lew, T.Hills, I.Kozieradzki, Y.H.Lin, A.Hassanal M.Schapira, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, M.Sundstrom A.Bochkarev, R.Hui, J.D.Artz, T.Xiao, Structural Genomics Conso (Sgc)
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A, B, C
Engineered: Yes
Organism_scientific: Cryptosporidium Parvum Iowa II
Organism_taxid: 353152
Strain: Iowa Type II
Gene: Cgd2_4120
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15_tevlic

Molecule: Cyclosporin A
Chain: T, U, V
Synonym: Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.482 119.303 127.877 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ABA, BMT, DAL, MLE, MVA, SAR enzyme
Gene CGD2
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2poy.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2poy.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2poy.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2POY
  • CSU: Contacts of Structural Units for 2POY
  • Likely Quarternary Molecular Structure file(s) for 2POY
  • Structure Factors (396 Kb)
  • Retrieve 2POY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2POY from S2C, [Save to disk]
  • Re-refined 2poy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2POY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2POY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2POY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2poy_T] [2poy_A] [2poy_C] [2poy_B] [2poy_V] [2poy_U] [2poy]
  • SWISS-PROT database: [A3FQA7]
  • Domain organization of [A3FQA7_CRYPV] by SWISSPFAM
  • Other resources with information on 2POY
  • Community annotation for 2POY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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