2PRG	Complex (Thiazolidinedione Receptor)	date	Aug 14, 1998
title	Ligand-Binding Domain Of The Human Peroxisome Proliferator A Receptor Gamma
authors	R.T.Nolte, G.B.Wisely, M.V.Milburn
compound		source
Molecule: Peroxisome Proliferator Activated Receptor Gamma Chain: A, B Fragment: Lbd (Ligand Binding Domain), Residues 207-477 Synonym: E Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Nucleus Gene: Human Ppar Gamma Cdna Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset A Expression_system_gene: Hppargamma
Molecule: Nuclear Receptor Coactivator Src-1 Chain: C Fragment: Fragment Containing Hd1 & Hd2 Residues 628-703 Engineered: Yes Other_details: Complex With Rosiglitazone (Brl-49653) Regis 122320-73-4		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Nucleus Gene: Src-1 Cdna Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset A
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.210 69.061 177.966 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	BRL BindingDB	enzyme
note	2PRG is a representative structure
related structures	by homologous chain: 1NHZ, 1QKN, 1X7B
Gene Ontology	Chain Function Process Component A, B C
Primary reference	Ligand binding and co-activator assembly of the peroxisome proliferator-activated receptor-gamma., Nolte RT, Wisely GB, Westin S, Cobb JE, Lambert MH, Kurokawa R, Rosenfeld MG, Willson TM, Glass CK, Milburn MV, Nature 1998 Sep 10;395(6698):137-43. PMID:9744270

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (2prg.pdb1.gz) 51 Kb Biological Unit Coordinates (2prg.pdb2.gz) 52 Kb LPC: Ligand-Protein Contacts for 2PRG CSU: Contacts of Structural Units for 2PRG Likely Quarternary Molecular Structure file(s) for 2PRG Retrieve 2PRG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PRG from S2C, [Save to disk]

View 2PRG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PRG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PRG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2prga_, region A [Jmol] [rasmolscript] [script source]     - Domain d2prgb_, region B [Jmol] [rasmolscript] [script source]     - Domain d2prgc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2prg] [2prg_B] [2prg_A] [2prg_C] SWISS-PROT database: [Q15788] [P37231] Domain organization of [NCOA1_HUMAN] [PPARG_HUMAN] by SWISSPFAM Domain found in 2PRG: [HOLI ] by SMART

Other resources with information on 2PRG

Community annotation for 2PRG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 2PRG from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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