1NHZ Hormone Receptor date Dec 20, 2002
title Crystal Structure Of The Antagonist Form Of Glucocorticoid R
authors B.Kauppi, C.Jakob, M.Farnegardh, J.Yang, H.Ahola, M.Alarcon, K.Cal O.Engstrom, J.Harlan, S.Muchmore, A.K.Ramqvist, S.Thorell, L.Oh J.Greer, J.A.Gustafsson, J.Carlstedt-Duke, M.Carlquist
compound source
Molecule: Glucocorticoid Receptor
Chain: A
Fragment: Residue 500-777, Hinge And Steroid Binding Domain
Synonym: Gr
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.859 109.764 39.261 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 486, HEZ BindingDB enzyme
related structures by homologous chain: 2PRG
Primary referenceThe three-dimensional structures of antagonistic and agonistic forms of the glucocorticoid receptor ligand-binding domain: RU-486 induces a transconformation that leads to active antagonism., Kauppi B, Jakob C, Farnegardh M, Yang J, Ahola H, Alarcon M, Calles K, Engstrom O, Harlan J, Muchmore S, Ramqvist AK, Thorell S, Ohman L, Greer J, Gustafsson JA, Carlstedt-Duke J, Carlquist M, J Biol Chem 2003 Jun 20;278(25):22748-54. PMID:12686538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1nhz.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (1nhz.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 1NHZ
  • CSU: Contacts of Structural Units for 1NHZ
  • Likely Quarternary Molecular Structure file(s) for 1NHZ
  • Structure Factors (189 Kb)
  • Retrieve 1NHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NHZ from S2C, [Save to disk]
  • Re-refined 1nhz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NHZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NHZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nhza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1nhz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nhz] [1nhz_A]
  • SWISS-PROT database: [P04150]
  • Domain organization of [GCR_HUMAN] by SWISSPFAM
  • Domain found in 1NHZ: [HOLI ] by SMART
  • Other resources with information on 1NHZ
  • Community annotation for 1NHZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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