2PVS Hydrolase date May 10, 2007
title Structure Of Human Pancreatic Lipase Related Protein 2 Mutan
authors S.Spinelli, C.Eydoux, F.Carriere, C.Cambillau
compound source
Molecule: Pancreatic Lipase-Related Protein 2
Chain: A, B
Ec: 3.1.1.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pnliprp2, Plrp2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd 1168
Expression_system_vector_type: Pgapzb
symmetry Space Group: I 41 2 2
R_factor 0.190 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
216.181 216.181 123.672 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CA, SO4 enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of human pancreatic lipase-related protein 2 with the lid in an open conformation., Eydoux C, Spinelli S, Davis TL, Walker JR, Seitova A, Dhe-Paganon S, De Caro A, Cambillau C, Carriere F, Biochemistry. 2008 Sep 9;47(36):9553-64. Epub 2008 Aug 15. PMID:18702514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvs.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2pvs.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (2pvs.pdb3.gz) 539 Kb
  • LPC: Ligand-Protein Contacts for 2PVS
  • CSU: Contacts of Structural Units for 2PVS
  • Likely Quarternary Molecular Structure file(s) for 2PVS
  • Structure Factors (2073 Kb)
  • Retrieve 2PVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVS from S2C, [Save to disk]
  • Re-refined 2pvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PVS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvs_A] [2pvs_B] [2pvs]
  • SWISS-PROT database: [P54317]
  • Domain organization of [LIPR2_HUMAN] by SWISSPFAM
  • Domain found in 2PVS: [LH2 ] by SMART
  • Other resources with information on 2PVS
  • Community annotation for 2PVS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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