2Q47 Structural Genomics, Unknown Function date May 31, 2007
title Ensemble Refinement Of The Protein Crystal Structure Of A Pu Phosphoprotein Phosphatase From Arabidopsis Thaliana Gene A
authors E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips Jr., Cent Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Probable Tyrosine-Protein Phosphatase At1g05000
Chain: A, B
Fragment: Residues 52-202
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Strain: Cv. Columbia
Gene: At1g05000, T7a14.14
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp-13
Other_details: Pqe Derivative
symmetry Space Group: P 21 3
R_factor 0.160 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.483 124.483 124.483 90.00 90.00 90.00
method X-Ray Diffraction, 16 Modelsresolution 3.30 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnsemble refinement of protein crystal structures: validation and application., Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN Jr, Structure. 2007 Sep;15(9):1040-52. PMID:17850744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (798 Kb) [Save to disk]
  • Biological Unit Coordinates (2q47.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2q47.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 2Q47
  • CSU: Contacts of Structural Units for 2Q47
  • Likely Quarternary Molecular Structure file(s) for 2Q47
  • Structure Factors (558 Kb)
  • Retrieve 2Q47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q47 from S2C, [Save to disk]
  • View 2Q47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q47
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q47, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q47_B] [2q47_A] [2q47]
  • SWISS-PROT database: [Q9ZVN4]
  • Domain organization of [Y1500_ARATH] by SWISSPFAM
  • Other resources with information on 2Q47
  • Community annotation for 2Q47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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