2QF6 Chaperone date Jun 26, 2007
title Hsp90 Complexed With A56322
authors C.H.Park
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A, B, C, D
Synonym: Hsp 86, Renal Carcinoma Antigen Ny- Ren-38
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
symmetry Space Group: P 43 21 2
R_factor 0.231 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.824 118.824 180.779 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand A56 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery and design of novel HSP90 inhibitors using multiple fragment-based design strategies., Huth JR, Park C, Petros AM, Kunzer AR, Wendt MD, Wang X, Lynch CL, Mack JC, Swift KM, Judge RA, Chen J, Richardson PL, Jin S, Tahir SK, Matayoshi ED, Dorwin SA, Ladror US, Severin JM, Walter KA, Bartley DM, Fesik SW, Elmore SW, Hajduk PJ, Chem Biol Drug Des. 2007 Jul;70(1):1-12. PMID:17630989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (2qf6.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (2qf6.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (2qf6.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (2qf6.pdb4.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2QF6
  • CSU: Contacts of Structural Units for 2QF6
  • Likely Quarternary Molecular Structure file(s) for 2QF6
  • Retrieve 2QF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QF6 from S2C, [Save to disk]
    • View 2QF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QF6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QF6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qf6_C] [2qf6_B] [2qf6_D] [2qf6] [2qf6_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 2QF6: [HATPase_c ] by SMART
    • Other resources with information on 2QF6
  • Community annotation for 2QF6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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