2QY6	Structural Genomics, Unknown Function	date	Aug 13, 2007
title	Crystal Structure Of The N-Terminal Domain Of Upf0209 Protei From Escherichia Coli O157:H7
authors	J.B.Bonanno, M.Dickey, K.T.Bain, M.Eberle, S.Ozyurt, D.Smith, S.Wa J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound		source
Molecule: Upf0209 Protein Yfck Chain: A, B Fragment: N-Terminal Domain: Residues 2-247 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83334 Strain: O157:H7 Gene: Yfck, Z3587, Ecs3208 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet Expression_system_plasmid: Modified Pet26
symmetry	Space Group: C 2 2 21	R_factor 0.225 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.067 80.468 234.376 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (2qy6.pdb1.gz) 82 Kb Biological Unit Coordinates (2qy6.pdb2.gz) 83 Kb CSU: Contacts of Structural Units for 2QY6 Likely Quarternary Molecular Structure file(s) for 2QY6 Structure Factors (349 Kb) Retrieve 2QY6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QY6 from S2C, [Save to disk] Re-refined 2qy6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QY6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QY6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QY6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qy6_B] [2qy6_A] [2qy6] SWISS-PROT database: [Q8XCQ7] Domain organization of [MNMC_ECO57] by SWISSPFAM

Other resources with information on 2QY6

Community annotation for 2QY6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---