2QYT Oxidoreductase date Aug 15, 2007
title Crystal Structure Of 2-Dehydropantoate 2-Reductase From Porp Gingivalis W83
authors K.Tan, R.Wu, S.Moy, A.Joachimiak, Midwest Center For Structural (Mcsg)
compound source
Molecule: 2-Dehydropantoate 2-Reductase
Chain: A
Engineered: Yes
 Organism_scientific: Porphyromonas Gingivalis
Organism_taxid: 242619
Strain: W83
Atcc: Baa-308
Gene: Pane, Pg_2205
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 41 21 2
R_factor 0.195 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.577 79.577 98.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand EDO, MSE, SO4 enzyme
Gene PG
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2qyt.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2QYT
  • CSU: Contacts of Structural Units for 2QYT
  • Likely Quarternary Molecular Structure file(s) for 2QYT
  • Structure Factors (261 Kb)
  • Retrieve 2QYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QYT from S2C, [Save to disk]
  • Re-refined 2qyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QYT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QYT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qyt] [2qyt_A]
  • SWISS-PROT database: [Q7MT04]
  • Domain organization of [Q7MT04_PORGI] by SWISSPFAM
    • Other resources with information on 2QYT
  • Community annotation for 2QYT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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