2TMP Metalloprotease Inhibitor date May 26, 1998
title N-Terminal Domain Of Tissue Inhibitor Of Metalloproteinase- (N-Timp-2), Nmr, 49 Structures
authors F.W.Muskett, T.A.Frenkiel, J.Feeney, R.B.Freedman, M.D.Carr, R.A.Williamson
compound source
Molecule: Tissue Inhibitor Of Metalloproteinases-2
Chain: A
Fragment: N-Terminal Domain, Residues 1-127
Synonym: Metalloproteinase Inhibitor, Timp-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_cellular_location: Intracellular Inclusion Bodies;
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23d
Other_details: Protein Refolded From Inclusion Bodies
methodSolution NMR
related structures by homologous chain: 1BUV

Primary referenceHigh resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 and characterization of its interaction site with matrix metalloproteinase-3., Muskett FW, Frenkiel TA, Feeney J, Freedman RB, Carr MD, Williamson RA, J Biol Chem 1998 Aug 21;273(34):21736-43. PMID:9705310
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1596 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2TMP
  • Original NMR restraints for 2TMP from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2TMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2TMP from S2C, [Save to disk]
  • View 2TMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2TMP
  • VIPERdb: visual, structural and computational analysis of 2TMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2TMP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2tmp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2tmp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2tmp] [2tmp_A]
  • SWISS-PROT database: [P16035]
  • Domain organization of [TIMP2_HUMAN] by SWISSPFAM
  • Domains found in 2TMP: [C345C] [NTR ] by SMART
  • Other resources with information on 2TMP
  • Community annotation for 2TMP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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