2V0N	Lyase	date	May 15, 2007
title	Activated Response Regulator Pled In Complex With C-Digmp An Alpha-S
authors	P.Wassmann, T.Schirmer
compound		source
Molecule: Response Regulator Pled Chain: A, B Fragment: Residues 2-454 Synonym: Stalked Cell Differentiation-Controlling Protein, Ec: 4.6.1.- Engineered: Yes Other_details: Berrylium Fluoride Modification Of A 53 And		Organism_scientific: Caulobacter Vibrioides Organism_taxid: 190650 Strain: Cb15 Atcc: 19089 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_plasmid: Prun
symmetry	Space Group: P 21 21 2	R_factor 0.215 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.965 132.557 88.425 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.71 Å
ligand	BEF, C2E, CL, GAV, MG, SO4	enzyme	Lyase E.C.4.6.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of BeF3- -modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition., Wassmann P, Chan C, Paul R, Beck A, Heerklotz H, Jenal U, Schirmer T, Structure. 2007 Aug;15(8):915-27. PMID:17697997

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (2v0n.pdb1.gz) 143 Kb LPC: Ligand-Protein Contacts for 2V0N CSU: Contacts of Structural Units for 2V0N Likely Quarternary Molecular Structure file(s) for 2V0N Structure Factors (309 Kb) Retrieve 2V0N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V0N from S2C, [Save to disk] Re-refined 2v0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V0N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V0N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V0N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v0n] [2v0n_B] [2v0n_A] SWISS-PROT database: [Q9A5I5] Domain organization of [PLED_CAUCR] by SWISSPFAM Domains found in 2V0N: [GGDEF] [REC ] by SMART

Other resources with information on 2V0N

Community annotation for 2V0N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---