2VSZ	Apoptosis	date	May 01, 2008
title	Crystal Structure Of The Elmo1 Ph Domain
authors	D.Komander, M.Patel, D.Barford, J.F.Cote
compound		source
Molecule: Engulfment And Cell Motility Protein 1 Chain: A, B Fragment: Pleckstrin Homology Domain, Residues 532-675 Synonym: Ced-12 Homolog, Elmo1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
symmetry	Space Group: P 61 2 2	R_factor 0.208 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 166.016 166.016 81.704 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	An alpha-helical extension of the ELMO1 pleckstrin homology domain mediates direct interaction to DOCK180 and is critical in Rac signaling., Komander D, Patel M, Laurin M, Fradet N, Pelletier A, Barford D, Cote JF, Mol Biol Cell. 2008 Nov;19(11):4837-51. Epub 2008 Sep 3. PMID:18768751

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2vsz.pdb1.gz) 102 Kb CSU: Contacts of Structural Units for 2VSZ Likely Quarternary Molecular Structure file(s) for 2VSZ Structure Factors (225 Kb) Retrieve 2VSZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VSZ from S2C, [Save to disk] Re-refined 2vsz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VSZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VSZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VSZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vsz] [2vsz_A] [2vsz_B] SWISS-PROT database: [Q92556] Domain organization of [ELMO1_HUMAN] by SWISSPFAM

Other resources with information on 2VSZ

Community annotation for 2VSZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---