2VT0 X-ray structure of a conjugate with conduritol-beta-epoxide of acid-beta-glucosidase overexpressed in cultured plant cells date
authors Brumshtein, B., Greenblatt, H.M., Shaaltiel, Y., Aviezer, D., Silman, I., Futerman, A.H., Sussman, J.L.
compound source
symmetry
R_factor
R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand CBU, FUC, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceAcid beta-glucosidase: insights from structural analysis and relevance to Gaucher disease therapy., Kacher Y, Brumshtein B, Boldin-Adamsky S, Toker L, Shainskaya A, Silman I, Sussman JL, Futerman AH, Biol Chem. 2008 Nov;389(11):1361-9. PMID:18783340
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (2vt0.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2vt0.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2VT0
  • CSU: Contacts of Structural Units for 2VT0
  • Likely Quarternary Molecular Structure file(s) for 2VT0
  • Structure Factors (447 Kb)
  • Retrieve 2VT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VT0 from S2C, [Save to disk]
  • Re-refined 2vt0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VT0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VT0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vt0_B] [2vt0_A] [2vt0]
  • SWISS-PROT database: [Q9BDT0]
  • Domain organization of [GLCM_PANTR] by SWISSPFAM
  • Other resources with information on 2VT0
  • Community annotation for 2VT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science