2VW5 Chaperone date Jun 16, 2008
title Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin Bo N- Terminus Of Yeast Hsp90
authors S.M.Roe, C.Prodromou, L.H.Pearl
compound source
Molecule: Atp-Dependent Molecular Chaperone Hsp82
Chain: A, B, C, D
Fragment: N-Term Domain, Residues 1-214
Synonym: Hsp90, Heat Shock Protein Hsp90 Heat-Inducible Iso Kda Heat Shock Protein;
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Prseta
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.193 104.785 109.913 90.00 89.98 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BC6, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceOptimizing natural products by biosynthetic engineering: discovery of nonquinone Hsp90 inhibitors., Zhang MQ, Gaisser S, Nur-E-Alam M, Sheehan LS, Vousden WA, Gaitatzis N, Peck G, Coates NJ, Moss SJ, Radzom M, Foster TA, Sheridan RM, Gregory MA, Roe SM, Prodromou C, Pearl L, Boyd SM, Wilkinson B, Martin CJ, J Med Chem. 2008 Sep 25;51(18):5494-7. PMID:18800759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (2vw5.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (2vw5.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (2vw5.pdb3.gz) 72 Kb
  • Biological Unit Coordinates (2vw5.pdb4.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2VW5
  • CSU: Contacts of Structural Units for 2VW5
  • Likely Quarternary Molecular Structure file(s) for 2VW5
  • Structure Factors (1165 Kb)
  • Retrieve 2VW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VW5 from S2C, [Save to disk]
  • Re-refined 2vw5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VW5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vw5_D] [2vw5_B] [2vw5_A] [2vw5] [2vw5_C]
  • SWISS-PROT database: [P02829]
  • Domain organization of [HSP82_YEAST] by SWISSPFAM
  • Domain found in 2VW5: [HATPase_c ] by SMART
    • Other resources with information on 2VW5
  • Community annotation for 2VW5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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