2WB2	Lyase Dna	date	Feb 20, 2009
title	Drosophila Melanogaster (6-4) Photolyase Bound To Double Str Containing A T(6-4)C Photolesion
authors	A.F.Glas, S.Schneider, M.J.Maul, U.Hennecke, T.Carell
compound		source
Molecule: Photolyase Chain: A Fragment: Residues 1-520 Synonym: Dna Photolyase, Re11660p Ec: 4.1.99.3 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_taxid: 7227 Expression_system: Escherichia Coli Expression_system_taxid: 83333 Expression_system_strain: K-12 Expression_system_variant: Rosetta-Gami Plyss (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Derived From Pdest007
Molecule: 5'-D(Apcpapgpcpgpgp64ppzpgpcpap Gpg Chain: C Engineered: Yes Other_details: 6-4 Link Between T 8 And C 8 (See Remark 600		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 5'-D(Tpapcpcptpgpcpgpapcpcpgpcptpg Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.550 89.000 91.670 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	64P, FAD, Z	enzyme	Lyase E.C.4.1.99.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of the T(6-4)C Lesion in Complex with a (6-4) DNA Photolyase and Repair of UV-Induced (6-4) and Dewar Photolesions., Glas AF, Schneider S, Maul MJ, Hennecke U, Carell T, Chemistry. 2009 Aug 31. PMID:19722240

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2wb2.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 2WB2 CSU: Contacts of Structural Units for 2WB2 Likely Quarternary Molecular Structure file(s) for 2WB2 Structure Factors (112 Kb) Retrieve 2WB2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WB2 from S2C, [Save to disk] Re-refined 2wb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WB2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WB2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WB2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1e2wb2, region B:169-232 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wb2_D] [2wb2_C] [2wb2] [2wb2_A] SWISS-PROT database: [Q8SXK5] Domain organization of [Q8SXK5_DROME] by SWISSPFAM

Other resources with information on 2WB2

Community annotation for 2WB2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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