OCA Atlas for 2WDR

2WDR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

F3S, FAD, FES, HEM, NA, PCI, SF4, TEO

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, I
B, F, J
C, G, K	electron transfer activity
D, L, H	electron transfer activity

Primary reference

Structure of Escherichia coli succinate:quinone oxidoreductase with an occupied and empty quinone-binding site., Ruprecht J, Yankovskaya V, Maklashina E, Iwata S, Cecchini G, J Biol Chem. 2009 Aug 25. PMID:19710024

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]

Biological Unit Coordinates (2wdr.pdb1.gz) 162 Kb

Biological Unit Coordinates (2wdr.pdb2.gz) 163 Kb

Biological Unit Coordinates (2wdr.pdb3.gz) 163 Kb

LPC: Ligand-Protein Contacts for 2WDR

CSU: Contacts of Structural Units for 2WDR

Structure Factors (2045 Kb)

Retrieve 2WDR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2WDR from S2C, [Save to disk]

Re-refined 2wdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WDR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wdr] [2wdr_A] [2wdr_B] [2wdr_C] [2wdr_D] [2wdr_E] [2wdr_F] [2wdr_G] [2wdr_H] [2wdr_I] [2wdr_J] [2wdr_K] [2wdr_L]

SWISS-PROT database: [P0AC41] [P07014] [P69054] [P0AC44]

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