2WFL Hydrolase date Apr 08, 2009
title Crystal Structure Of Polyneuridine Aldehyde Esterase
authors L.Yang, M.Hill, S.Panjikar, M.Wang, J.Stoeckigt
compound source
Molecule: Polyneuridine-Aldehyde Esterase
Chain: A
Ec: 3.1.1.78
Engineered: Yes
Organism_scientific: Rauvolfia Serpentina
Organism_common: Serpentwood
Organism_taxid: 4060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15prep4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-2

Molecule: Polyneuridine-Aldehyde Esterase
Chain: B
Ec: 3.1.1.78
Engineered: Yes

Organism_scientific: Rauvolfia Serpentina
Organism_common: Serpentwood
Organism_taxid: 4060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15prep4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-2
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.758 176.917 75.697 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CME, SO4 enzyme Hydrolase E.C.3.1.1.78 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis and enzymatic mechanism of the biosynthesis of C9- from C10-monoterpenoid indole alkaloids., Yang L, Hill M, Wang M, Panjikar S, Stockigt J, Angew Chem Int Ed Engl. 2009;48(28):5211-3. PMID:19496101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2wfl.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2wfl.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2WFL
  • CSU: Contacts of Structural Units for 2WFL
  • Structure Factors (504 Kb)
  • Retrieve 2WFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WFL from S2C, [Save to disk]
  • View 2WFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WFL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WFL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wfl] [2wfl_A] [2wfl_B]
  • SWISS-PROT database: [Q9SE93]
  • Domain organization of [PNAE_RAUSE] by SWISSPFAM
  • Other resources with information on 2WFL
  • Community annotation for 2WFL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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