2WTM Hydrolase date Sep 17, 2009
title Est1e From Butyrivibrio Proteoclasticus
authors D.C.Goldstone, V.L.Arcus
compound source
Molecule: Est1e
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Clostridium Proteoclasticum
Organism_taxid: 43305
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.15604 R_Free 0.19410
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.035 109.067 91.647 90.00 102.18 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GOL, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus., Goldstone DC, Villas-Boas SG, Till M, Kelly WJ, Attwood GT, Arcus VL, Proteins. 2009 Nov 24. PMID:20058325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2wtm.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2wtm.pdb2.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2WTM
  • CSU: Contacts of Structural Units for 2WTM
  • Structure Factors (1763 Kb)
  • Retrieve 2WTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WTM from S2C, [Save to disk]
  • Re-refined 2wtm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WTM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WTM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wtm_B] [2wtm_C] [2wtm] [2wtm_D] [2wtm_A]
  • SWISS-PROT database: [D2YW37]
  • Domain organization of [D2YW37_9FIRM] by SWISSPFAM
  • Other resources with information on 2WTM
  • Community annotation for 2WTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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