2XVS Crystal structure of human TTC5 (Strap) C-terminal OB domain date
authors Adams, J., Pike, A.C.W., Maniam, S., Sharpe, T.D., Coutts, A.S., Knapp, S., Thangue, B.La., Bullock, A.N.
compound source
symmetry
R_factor
R_Free 0.23638
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CL, EDO, IOD enzyme
Primary referenceThe p53 cofactor Strap exhibits an unexpected TPR motif and oligonucleotide-binding (OB)-fold structure., Adams CJ, Pike AC, Maniam S, Sharpe TD, Coutts AS, Knapp S, La Thangue NB, Bullock AN, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3778-83. Epub 2012 Feb 23. PMID:22362889
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2xvs.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2XVS
  • CSU: Contacts of Structural Units for 2XVS
  • Structure Factors (233 Kb)
  • Retrieve 2XVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XVS from S2C, [Save to disk]
  • Re-refined 2xvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XVS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XVS, from MSDmotif at EBI
  • Fold representative 2xvs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xvs] [2xvs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XVS
  • Community annotation for 2XVS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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