2Y35	Hydrolase Dna	date	Dec 18, 2010
title	Crystal Structure Of Xrn1-Substrate Complex
authors	M.Jinek, S.M.Coyle, J.A.Doudna
compound		source
Molecule: Ld22664p Chain: A Fragment: Residues 1-1140 Synonym: Pacman, Isoform A, Xrn1 Ec: 3.1.13.- Engineered: Yes Mutation: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_plasmid: Pfastbac1
Molecule: Dt11 (5'-D(Tptptptptptptptptptptp)-3' Chain: B		Synthetic: Yes Organism_scientific: Sythetic Construct Organism_taxid: 32630
symmetry	Space Group: P 42 21 2	R_factor 0.2246 R_Free 0.2711
crystal cell	length a length b length c angle alpha angle beta angle gamma 149.990 149.990 154.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	MG	enzyme	Hydrolase E.C.3.1.13 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Coupled 5' nucleotide recognition and processivity in xrn1-mediated mRNA decay., Jinek M, Coyle SM, Doudna JA, Mol Cell. 2011 Mar 4;41(5):600-8. PMID:21362555

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk] Biological Unit Coordinates (2y35.pdb1.gz) 346 Kb LPC: Ligand-Protein Contacts for 2Y35 CSU: Contacts of Structural Units for 2Y35 Structure Factors (241 Kb) Retrieve 2Y35 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y35 from S2C, [Save to disk] Re-refined 2y35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2Y35

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y35, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y35_A] [2y35_B] [2y35] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2Y35

Community annotation for 2Y35 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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