2Y9W	Oxidoreductase	date	Feb 17, 2011
title	Crystal Structure Of Ppo3, A Tyrosinase From Agaricus Bispor Deoxy-Form That Contains Additional Unknown Lectin-Like Sub
authors	W.T.Ismaya, H.J.Rozeboom, A.Weijn, J.J.Mes, F.Fusetti, H.J.Wicher B.W.Dijkstra
compound		source
Molecule: Polyphenol Oxidase Chain: A, B Fragment: Residues 2-392 Synonym: Tyrosinase Ec: 1.14.18.1 Other_details: Thioether Bond Between His85 And Cys83		Organism_scientific: Agaricus Bisporus Organism_common: Common Mushroom Organism_taxid: 5341 Other_details: Commercial
Molecule: Lectin-Like Fold Protein Chain: C, D Other_details: Orf 239342 Of A. Bisporus Genome Consortium		Organism_scientific: Agaricus Bisporus Organism_common: Common Mushroom Organism_taxid: 5341 Other_details: Commercial
symmetry	Space Group: P 21 21 2	R_factor 0.181 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.060 104.520 109.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CU, HO, PEG, PGE	enzyme	Oxidoreductase E.C.1.14.18.1 BRENDA
note	2Y9W is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of Agaricus bisporus Mushroom Tyrosinase: Identity of the Tetramer Subunits and Interaction with Tropolone., Ismaya WT, Rozeboom HJ, Weijn A, Mes JJ, Fusetti F, Wichers HJ, Dijkstra BW, Biochemistry. 2011 Jun 21;50(24):5477-5486. Epub 2011 May 27. PMID:21598903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk] Biological Unit Coordinates (2y9w.pdb1.gz) 181 Kb Biological Unit Coordinates (2y9w.pdb2.gz) 181 Kb LPC: Ligand-Protein Contacts for 2Y9W CSU: Contacts of Structural Units for 2Y9W Structure Factors (739 Kb) Retrieve 2Y9W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y9W from S2C, [Save to disk] Re-refined 2y9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y9W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Y9W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y9W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y9w] [2y9w_D] [2y9w_B] [2y9w_C] [2y9w_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2Y9W

Community annotation for 2Y9W at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---