2YFH	Oxidoreductase	date	Apr 05, 2011
title	Structure Of A Chimeric Glutamate Dehydrogenase
authors	T.Oliveira, S.Panjikar, M.A.Sharkey, J.B.Carrigan, M.Hamza, P.C.E A.R.Khan
compound		source
Molecule: Glutamate Dehydrogenase, Nad-Specific Glutamate Dehydrogenase, Glutamate Dehydrogenase; Chain: A, B, C, D, E, F Fragment: Residues 1-200,202-405,407-450 Ec: 1.4.1.4, 1.4.1.3, 1.4.1.2 Engineered: Yes		Organism_scientific: Clostridium Symbiosum, Escherichia Col Organism_taxid: 1512, 562 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Delta Gdha Expression_system_vector_type: Plasmid Expression_system_vector: Pet21a
symmetry	Space Group: P 1	R_factor 0.215 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.102 113.859 109.581 116.54 101.54 104.09
method	X-Ray Diffraction	resolution	2.70 Å
ligand		enzyme	Oxidoreductase E.C.1.4.1.4 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Crystal structure of a chimaeric bacterial glutamate dehydrogenase., Oliveira T, Sharkey MA, Engel PC, Khan AR, Acta Crystallogr F Struct Biol Commun. 2016 Jun 1;72(Pt 6):462-6. doi:, 10.1107/S2053230X16007305. Epub 2016 May 23. PMID:27303899

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk] Biological Unit Coordinates (2yfh.pdb1.gz) 406 Kb CSU: Contacts of Structural Units for 2YFH Structure Factors (781 Kb) Retrieve 2YFH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YFH from S2C, [Save to disk] Re-refined 2yfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YFH in 3D

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Visual 3D analysis of 2YFH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YFH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yfh_C] [2yfh_B] [2yfh_E] [2yfh_A] [2yfh] [2yfh_D] [2yfh_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YFH: [ELFV_dehydrog ] by SMART

Other resources with information on 2YFH

Community annotation for 2YFH at PDBWiki (http://pdbwiki.org)

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