2YGM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, FUC, GAL, GLA, NA, NAG enzyme
Primary referenceThe Overall Architecture and Receptor Binding of Pneumococcal Carbohydrate-Antigen-Hydrolyzing Enzymes., Higgins MA, Ficko-Blean E, Meloncelli PJ, Lowary TL, Boraston AB, J Mol Biol. 2011 Jul 15. PMID:21767550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (2ygm.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2ygm.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2YGM
  • CSU: Contacts of Structural Units for 2YGM
  • Structure Factors (251 Kb)
  • Retrieve 2YGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YGM from S2C, [Save to disk]
  • Re-refined 2ygm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ygm] [2ygm_A] [2ygm_B]
  • SWISS-PROT database:
  • Domain found in 2YGM: [NPCBM ] by SMART

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