2YMN Viral Protein date Oct 09, 2012
title Organization Of The Influenza Virus Replication Machinery
authors A.Moeller, R.N.Kirchdoerfer, C.S.Potter, B.Carragher, I.A.Wilson
compound source
Molecule: Nucleoprotein
Chain: A, B, C, D, E, F
Synonym: Nucleocapsid Protein, Protein N
Engineered: Yes
Other_details: Helical Assembly Of Nucleoproteins Within In Rnp Filament
 Organism_scientific: Influenza A Virus (Apuerto Rico8193
Organism_taxid: 211044
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293t17
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 20.00 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceOrganization of the influenza virus replication machinery., Moeller A, Kirchdoerfer RN, Potter CS, Carragher B, Wilson IA, Science. 2012 Dec 21;338(6114):1631-4. doi: 10.1126/science.1227270. Epub 2012, Nov 22. PMID:23180774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk]
  • Biological Unit Coordinates (2ymn.pdb1.gz) 382 Kb
  • CSU: Contacts of Structural Units for 2YMN
  • Retrieve 2YMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YMN from S2C, [Save to disk]
    • View 2YMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YMN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YMN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ymn_E] [2ymn_D] [2ymn_A] [2ymn_B] [2ymn_F] [2ymn] [2ymn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2YMN
  • Community annotation for 2YMN at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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