2YPF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism., Stella S, Molina R, Yefimenko I, Prieto J, Silva G, Bertonati C, Juillerat A, Duchateau P, Montoya G, Acta Crystallogr D Biol Crystallogr. 2013 Sep 1;69(Pt 9):1707-16. doi:, 10.1107/S0907444913016429. Epub 2013 Aug 15. PMID:23999294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (2ypf.pdb1.gz) 116 Kb
  • CSU: Contacts of Structural Units for 2YPF
  • Structure Factors (415 Kb)
  • Retrieve 2YPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YPF from S2C, [Save to disk]
  • Re-refined 2ypf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ypf] [2ypf_A] [2ypf_B] [2ypf_C]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science