2YPY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, B, I, D, H, G, J, E, C, A


Primary referenceA Structural Basis for BRD2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus LANA Proteins., Hellert J, Weidner-Glunde M, Krausze J, Richter U, Adler H, Fedorov R, Pietrek M, Ruckert J, Ritter C, Schulz TF, Luhrs T, PLoS Pathog. 2013 Oct;9(10):e1003640. doi: 10.1371/journal.ppat.1003640. Epub, 2013 Oct 17. PMID:24146614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (471 Kb) [Save to disk]
  • Biological Unit Coordinates (2ypy.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (2ypy.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (2ypy.pdb3.gz) 95 Kb
  • Biological Unit Coordinates (2ypy.pdb4.gz) 95 Kb
  • Biological Unit Coordinates (2ypy.pdb5.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2YPY
  • CSU: Contacts of Structural Units for 2YPY
  • Structure Factors (423 Kb)
  • Retrieve 2YPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YPY from S2C, [Save to disk]
  • Re-refined 2ypy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ypy_D] [2ypy_E] [2ypy_F] [2ypy_G] [2ypy_H] [2ypy_I] [2ypy_J] [2ypy] [2ypy_A] [2ypy_B] [2ypy_C]
  • SWISS-PROT database:

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