2YWR	Transferase	date	Apr 23, 2007
title	Crystal Structure Of Gar Transformylase From Aquifex Aeolicu
authors	M.Kanagawa, S.Baba, S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei, Ri Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Phosphoribosylglycinamide Formyltransferase Chain: A Ec: 2.1.2.2 Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a
symmetry	Space Group: P 41 21 2	R_factor 0.204 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.955 59.955 105.934 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	CO, MG, MSE	enzyme	Transferase E.C.2.1.2.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structures and reaction mechanisms of the two related enzymes, PurN and PurU., Sampei G, Kanagawa M, Baba S, Shimasaki T, Taka H, Mitsui S, Fujiwara S, Yanagida Y, Kusano M, Suzuki S, Terao K, Kawai H, Fukai Y, Nakagawa N, Ebihara A, Kuramitsu S, Yokoyama S, Kawai G, J Biochem. 2013 Dec;154(6):569-79. doi: 10.1093/jb/mvt090. Epub 2013 Oct 9. PMID:24108189

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (2ywr.pdb1.gz) 40 Kb Biological Unit Coordinates (2ywr.pdb2.gz) 79 Kb LPC: Ligand-Protein Contacts for 2YWR CSU: Contacts of Structural Units for 2YWR Likely Quarternary Molecular Structure file(s) for 2YWR Structure Factors (258 Kb) Retrieve 2YWR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YWR from S2C, [Save to disk] Re-refined 2ywr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YWR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YWR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YWR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ywr_A] [2ywr] SWISS-PROT database: [O67023] Domain organization of [O67023_AQUAE] by SWISSPFAM

Other resources with information on 2YWR

Community annotation for 2YWR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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