3ATG Hydrolase date Jan 04, 2011
title Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
authors Y.Tanabe, Z.Pang, M.Oda, B.Mikami
compound source
Molecule: Glucanase
Chain: A
Synonym: Endo-1,3-Beta-Glucanase
Ec: 3.2.1.39
 Organism_scientific: Cellulosimicrobium Cellulans
Organism_taxid: 1710
Strain: Dk-1
symmetry Space Group: P 43
R_factor 0.146 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.309 71.309 60.069 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand CA, GOL, PO4 enzyme Hydrolase E.C.3.2.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and thermodynamic characterization of endo-1,3-beta-glucanase: Insights into the substrate recognition mechanism., Oda M, Inaba S, Kamiya N, Bekker GJ, Mikami B, Biochim Biophys Acta. 2017 Dec 12;1866(3):415-425. doi:, 10.1016/j.bbapap.2017.12.004. PMID:29246508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3atg.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3ATG
  • CSU: Contacts of Structural Units for 3ATG
  • Structure Factors (247 Kb)
  • Retrieve 3ATG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ATG from S2C, [Save to disk]
  • Re-refined 3atg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ATG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ATG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ATG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3atg] [3atg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ATG
  • Community annotation for 3ATG at PDBWiki (http://pdbwiki.org)
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