3AYR Hydrolase date May 16, 2011
title Gh5 Endoglucanase Egla From A Ruminal Fungus
authors C.W.Tseng, T.P.Ko, R.T.Guo, J.R.Liu
compound source
Molecule: Endoglucanase
Chain: A
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Piromyces Rhizinflatus
Organism_taxid: 73428
Gene: Egla
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet46 Eklic
symmetry Space Group: P 61 2 2
R_factor 0.170 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.396 83.396 225.085 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate binding of a GH5 endoglucanase from the ruminal fungus Piromyces rhizinflata., Tseng CW, Ko TP, Guo RT, Huang JW, Wang HC, Huang CH, Cheng YS, Wang AH, Liu JR, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Oct 1;67(Pt 10):1189-94., Epub 2011 Sep 24. PMID:22102024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (3ayr.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (3ayr.pdb2.gz) 255 Kb
  • CSU: Contacts of Structural Units for 3AYR
  • Structure Factors (224 Kb)
  • Retrieve 3AYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AYR from S2C, [Save to disk]
  • Re-refined 3ayr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AYR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AYR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ayr] [3ayr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AYR
  • Community annotation for 3AYR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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