3BBV Ribosome date Nov 11, 2007
title The Trna(Phe) Fitted Into The Low Resolution Cryo-Em Map Of 50s.Nc-Trna.Hsp15 Complex
authors L.Jiang, J.P.Abrahams
compound source
Molecule: Trna(Phe)
Chain: z
Synonym: Hsp15
Engineered: Yes
Other_details: Part Of The 50s Ribosomal Particle In Assemb Heat Shock Protein 15
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
ligand 4SU, 5MU, 7MG, H2U, MIA, PSU enzyme
Primary referenceRecycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15., Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, de Geus DC, Plaisier JR, Abrahams JP, J Mol Biol. 2009 Mar 13;386(5):1357-67. Epub 2008 Nov 5. PMID:19013177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3bbv.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 3BBV
  • CSU: Contacts of Structural Units for 3BBV
  • Retrieve 3BBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BBV from S2C, [Save to disk]
    • View 3BBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BBV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BBV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bbv_z] [3bbv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3BBV
  • Community annotation for 3BBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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