3BE8 Cell Adhesion date Nov 16, 2007
title Crystal Structure Of The Synaptic Protein Neuroligin 4
authors I.P.Fabrichny, P.Leone, G.Sulzenbacher, D.Comoletti, M.T.Miller, Y.Bourne, P.Marchot
compound source
Molecule: Neuroligin-4, X-Linked
Chain: A, B
Fragment: Extracellular Cholinesterase-Like Domain
Synonym: Neuroligin X, Hnlx
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlgn4x
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Expression_system_cell: Human Embryonic Kidney Cells (Hek)
symmetry Space Group: P 21 21 2
R_factor 0.167 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.730 154.050 81.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, FLC, GOL, NA, NAG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analysis of the Synaptic Protein Neuroligin and Its beta-Neurexin Complex: Determinants for Folding and Cell Adhesion., Fabrichny IP, Leone P, Sulzenbacher G, Comoletti D, Miller MT, Taylor P, Bourne Y, Marchot P, Neuron. 2007 Dec 20;56(6):979-91. PMID:18093521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (3be8.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 3BE8
  • CSU: Contacts of Structural Units for 3BE8
  • Likely Quarternary Molecular Structure file(s) for 3BE8
  • Structure Factors (528 Kb)
  • Retrieve 3BE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BE8 from S2C, [Save to disk]
  • Re-refined 3be8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BE8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BE8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3be8_A] [3be8_B] [3be8]
  • SWISS-PROT database: [Q8N0W4]
  • Domain organization of [NLGNX_HUMAN] by SWISSPFAM
  • Other resources with information on 3BE8
  • Community annotation for 3BE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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