3BKD Viral Protein, Membrane Protein date Dec 06, 2007
title High Resolution Crystal Structure Of Transmembrane Domain Of Protein
authors A.L.Stouffer, R.Acharya, D.Salom
compound source
Molecule: Transmembrane Domain Of Matrix Protein M2
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 22-46
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized; Transmembrane Domain Protein From Influenza A Virus
symmetry Space Group: P 1 21 1
R_factor 0.219 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.753 56.557 56.009 90.00 103.53 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand BOG, CL, MSE, NH2, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural basis for the function and inhibition of an influenza virus proton channel., Stouffer AL, Acharya R, Salom D, Levine AS, Di Costanzo L, Soto CS, Tereshko V, Nanda V, Stayrook S, DeGrado WF, Nature. 2008 Jan 31;451(7178):596-9. PMID:18235504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3bkd.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (3bkd.pdb2.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 3BKD
  • CSU: Contacts of Structural Units for 3BKD
  • Likely Quarternary Molecular Structure file(s) for 3BKD
  • Structure Factors (707 Kb)
  • Retrieve 3BKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BKD from S2C, [Save to disk]
  • Re-refined 3bkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BKD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BKD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bkd_A] [3bkd_B] [3bkd] [3bkd_F] [3bkd_E] [3bkd_G] [3bkd_D] [3bkd_H] [3bkd_C]
  • SWISS-PROT database: [Q9Q0P0]
  • Domain organization of [Q9Q0P0_9INFA] by SWISSPFAM
    • Other resources with information on 3BKD
  • Community annotation for 3BKD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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