3BO7 Isomerase Immunosuppressant date Dec 17, 2007
title Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-T Isomerase, 541.M00136
authors A.K.Wernimont, J.Lew, I.Kozieradzki, Y.H.Lin, X.Sun, C.Khuu, Y.Zha M.Schapira, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, A.Bochkarev J.D.Artz, T.Xiao, Structural Genomics Consortium (Sgc)
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin-T
Chain: A, B, C, D
Synonym: Ppiase, Rotamase
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: 541.M00136
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15-Mhl

Molecule: Cyclosporin A
Chain: E, F, G, H
Synonym: Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.631 100.805 86.184 90.00 116.28 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand ABA, BMT, DAL, EDO, MLE, MVA, SAR, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3bo7.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3bo7.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (3bo7.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (3bo7.pdb4.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3BO7
  • CSU: Contacts of Structural Units for 3BO7
  • Likely Quarternary Molecular Structure file(s) for 3BO7
  • Structure Factors (1147 Kb)
  • Retrieve 3BO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BO7 from S2C, [Save to disk]
  • Re-refined 3bo7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BO7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BO7, from MSDmotif at EBI
  • Fold representative 3bo7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bo7_D] [3bo7_C] [3bo7_F] [3bo7_B] [3bo7_E] [3bo7_G] [3bo7_A] [3bo7_H] [3bo7]
  • SWISS-PROT database: [D0VWS5]
  • Domain organization of [D0VWS5_TOXGO] by SWISSPFAM
  • Other resources with information on 3BO7
  • Community annotation for 3BO7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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