3BS6 Membrane Protein, Protein Transport date Dec 22, 2007
title 1.8 Angstrom Crystal Structure Of The Periplasmic Domain Of The Membrane Insertase Yidc
authors S.Ravaud, I.Sinning
compound source
Molecule: Inner Membrane Protein Oxaa
Chain: A, B
Fragment: Unp Residues 56-329
Synonym: Periplasmic Domain Of Yidc (P1d)
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Oxaa, Yidc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.150 55.640 63.330 90.00 101.12 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2PE, CA, EDO, MSE, PG4, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of the periplasmic domain of the Escherichia coli membrane protein insertase YidC contains a conserved substrate binding cleft., Ravaud S, Stjepanovic G, Wild K, Sinning I, J Biol Chem. 2008 Jan 30;. PMID:18234665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3bs6.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3bs6.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (3bs6.pdb3.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 3BS6
  • CSU: Contacts of Structural Units for 3BS6
  • Likely Quarternary Molecular Structure file(s) for 3BS6
  • Structure Factors (493 Kb)
  • Retrieve 3BS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BS6 from S2C, [Save to disk]
  • Re-refined 3bs6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BS6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BS6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bs6] [3bs6_B] [3bs6_A]
  • SWISS-PROT database: [P25714]
  • Belongs to the membrane protein insertase (yidc/alb3/oxa1) family according to TCDB.
  • Domain organization of [OXAA_ECOLI] by SWISSPFAM
    • Other resources with information on 3BS6
  • Community annotation for 3BS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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