3BU0 crystal structure of human ABH2 cross-linked to dsDNA with cofactors date
authors Yang, C.G., Yi, C., He, C.
compound source
symmetry
R_factor
R_Free 0.28394
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 2YR, AKG, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA., Yang CG, Yi C, Duguid EM, Sullivan CT, Jian X, Rice PA, He C, Nature. 2008 Apr 24;452(7190):961-5. PMID:18432238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3bu0.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3BU0
  • CSU: Contacts of Structural Units for 3BU0
  • Likely Quarternary Molecular Structure file(s) for 3BU0
  • Structure Factors (116 Kb)
  • Retrieve 3BU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BU0 from S2C, [Save to disk]
  • Re-refined 3bu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BU0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BU0, from MSDmotif at EBI
  • Fold representative 3bu0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bu0] [3bu0_B] [3bu0_C] [3bu0_A]
  • SWISS-PROT database: [Q6NS38]
  • Domain organization of [ALKB2_HUMAN] by SWISSPFAM
  • Other resources with information on 3BU0
  • Community annotation for 3BU0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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