OCA Atlas for 3D03

3D03

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, B, D, C, E, A

Primary reference

Substrate-Promoted Formation of a Catalytically Competent Binuclear Center and Regulation of Reactivity in a Glycerophosphodiesterase from Enterobacter aerogenes., Hadler KS, Tanifum EA, Yip SH, Mitic N, Guddat LW, Jackson CJ, Gahan LR, Nguyen K, Carr PD, Ollis DL, Hengge AC, Larrabee JA, Schenk G, J Am Chem Soc. 2008 Oct 3. PMID:18831553

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]

Biological Unit Coordinates (3d03.pdb1.gz) 266 Kb

Biological Unit Coordinates (3d03.pdb2.gz) 91 Kb

Biological Unit Coordinates (3d03.pdb3.gz) 92 Kb

Biological Unit Coordinates (3d03.pdb4.gz) 92 Kb

LPC: Ligand-Protein Contacts for 3D03

CSU: Contacts of Structural Units for 3D03

Likely Quarternary Molecular Structure file(s) for 3D03

Structure Factors (2368 Kb)

Retrieve 3D03 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3D03 from S2C, [Save to disk]

Re-refined 3d03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D03 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d03] [3d03_A] [3d03_B] [3d03_C] [3d03_D] [3d03_E] [3d03_F]

SWISS-PROT database: [Q6XBH1]

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]