3D94 Transferase date May 26, 2008
title Crystal Structure Of The Insulin-Like Growth Factor-1 Recept In Complex With Pqip
authors J.Wu, W.Li, W.T.Miller, S.R.Hubbard
compound source
Molecule: Insulin-Like Growth Factor 1 Receptor Beta Chain
Chain: A
Fragment: Protein Kinase Domain
Synonym: Insulin-Like Growth Factor I Receptor, Igf-I Recep Antigen;
Ec: 2.7.1.112, 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Igf1r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: H 3 2
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.182 208.182 50.853 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, D94, MHO BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSmall-molecule inhibition and activation-loop trans-phosphorylation of the IGF1 receptor., Wu J, Li W, Craddock BP, Foreman KW, Mulvihill MJ, Ji QS, Miller WT, Hubbard SR, EMBO J. 2008 Jul 23;27(14):1985-94. Epub 2008 Jun 19. PMID:18566589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3d94.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 3D94
  • CSU: Contacts of Structural Units for 3D94
  • Likely Quarternary Molecular Structure file(s) for 3D94
  • Structure Factors (153 Kb)
  • Retrieve 3D94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D94 from S2C, [Save to disk]
  • Re-refined 3d94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D94
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D94, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d94_A] [3d94]
  • SWISS-PROT database: [P08069]
  • Domain organization of [IGF1R_HUMAN] by SWISSPFAM
  • Domain found in 3D94: [TyrKc ] by SMART
  • Other resources with information on 3D94
  • Community annotation for 3D94 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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