3DDL date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PCW, PX4, RET, SXN, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ion channel activity
  • light-activated ion channel ...


    • Primary referenceCrystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore., Luecke H, Schobert B, Stagno J, Imasheva ES, Wang JM, Balashov SP, Lanyi JK, Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16561-5. Epub 2008 Oct 15. PMID:18922772
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3ddl.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3ddl.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3DDL
  • CSU: Contacts of Structural Units for 3DDL
  • Likely Quarternary Molecular Structure file(s) for 3DDL
  • Structure Factors (349 Kb)
  • Retrieve 3DDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DDL from S2C, [Save to disk]
  • Re-refined 3ddl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ddl] [3ddl_A] [3ddl_B]
  • SWISS-PROT database: [Q2S2F8]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain found in 3DDL: [Bac_rhodopsin ] by SMART

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