3DIP Lyase date Jun 20, 2008
title Crystal Structure Of An Enolase Protein From The Environment Shotgun Sequencing Of The Sargasso Sea
authors J.B.Bonanno, J.Freeman, K.T.Bain, F.Zhang, S.Ozyurt, D.Smith, S.Wa J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Enolase
Chain: A, B
Engineered: Yes
 Organism_scientific: Unidentified
Organism_taxid: 32644
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: F 4 3 2
R_factor 0.215 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
282.292 282.292 282.292 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SIC, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3dip.pdb1.gz) 451 Kb
  • LPC: Ligand-Protein Contacts for 3DIP
  • CSU: Contacts of Structural Units for 3DIP
  • Likely Quarternary Molecular Structure file(s) for 3DIP
  • Structure Factors (1735 Kb)
  • Retrieve 3DIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIP from S2C, [Save to disk]
  • Re-refined 3dip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DIP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dip_B] [3dip_A] [3dip]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3DIP: [MR_MLE ] by SMART
    • Other resources with information on 3DIP
  • Community annotation for 3DIP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science