3DY5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FE2, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • catalase activity


    • Primary referenceA covalent linker allows for membrane targeting of an oxylipin biosynthetic complex., Gilbert NC, Niebuhr M, Tsuruta H, Bordelon T, Ridderbusch O, Dassey A, Brash AR, Bartlett SG, Newcomer ME, Biochemistry. 2008 Oct 7;47(40):10665-76. Epub 2008 Sep 12. PMID:18785758
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (3dy5.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (3dy5.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 3DY5
  • CSU: Contacts of Structural Units for 3DY5
  • Likely Quarternary Molecular Structure file(s) for 3DY5
  • Structure Factors (532 Kb)
  • Retrieve 3DY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DY5 from S2C, [Save to disk]
  • Re-refined 3dy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dy5] [3dy5_A] [3dy5_C]
  • SWISS-PROT database: [O16025]
  • Domain found in 3DY5: [LH2 ] by SMART

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