3E03 Oxidoreductase date Jul 30, 2008
title Crystal Structure Of A Putative Dehydrogenase From Xanthomon Campestris
authors P.Sampathkumar, S.Wasserman, M.Rutter, S.Hu, K.Bain, L.Rodgers, S. J.M.Sauder, S.K.Burley, New York Sgx Research Center For Stru Genomics (Nysgxrc)
compound source
Molecule: Short Chain Dehydrogenase
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Xanthomonas Campestris Pv. Campestris
Organism_taxid: 340
Gene: Xcc3285
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)-Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc), Modified Pet26
symmetry Space Group: C 1 2 1
R_factor 0.161 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
251.286 41.351 73.323 90.00 96.62 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand CA, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3e03.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (3e03.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (3e03.pdb3.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3E03
  • CSU: Contacts of Structural Units for 3E03
  • Likely Quarternary Molecular Structure file(s) for 3E03
  • Structure Factors (1306 Kb)
  • Retrieve 3E03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E03 from S2C, [Save to disk]
  • Re-refined 3e03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3E03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3E03
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E03, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e03] [3e03_C] [3e03_A] [3e03_B]
  • SWISS-PROT database: [Q8P5Q1]
  • Domain organization of [Q8P5Q1_XANCP] by SWISSPFAM
    • Other resources with information on 3E03
  • Community annotation for 3E03 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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