3E2D	Hydrolase	date	Aug 05, 2008
title	The 1.4 A Crystal Structure Of The Large And Cold-Active Vib Alkaline Phosphatase
authors	R.Helland, R.L.Larsen, B.Asgeirsson
compound		source
Molecule: Alkaline Phosphatase Chain: A, B Ec: 3.1.3.1 Engineered: Yes		Organism_scientific: Vibrio Sp. G15-21 Organism_taxid: 169049 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Top10 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbluescript Ks II (+), Puc18
symmetry	Space Group: P 21 21 2	R_factor 0.155 R_Free 0.166
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.240 165.980 57.480 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	EDO, MG, SO4, ZN	enzyme	Hydrolase E.C.3.1.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B phosphatase activity
Primary reference	The 1.4 A crystal structure of the large and cold-active Vibrio sp. alkaline phosphatase., Helland R, Larsen RL, Asgeirsson B, Biochim Biophys Acta. 2009 Feb;1794(2):297-308. Epub 2008 Oct 15. PMID:18977465

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk] Biological Unit Coordinates (3e2d.pdb1.gz) 175 Kb LPC: Ligand-Protein Contacts for 3E2D CSU: Contacts of Structural Units for 3E2D Likely Quarternary Molecular Structure file(s) for 3E2D Structure Factors (3964 Kb) Retrieve 3E2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E2D from S2C, [Save to disk] Re-refined 3e2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E2D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3E2D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3E2D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e2d_B] [3e2d_A] [3e2d] SWISS-PROT database: [Q93P54] Domain organization of [Q93P54_9VIBR] by SWISSPFAM Domain found in 3E2D: [alkPPc ] by SMART

Other resources with information on 3E2D

Community annotation for 3E2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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