3E8C Transferase date Aug 19, 2008
title Crystal Structures Of The Kinase Domain Of Pka In Complex Wi Competitive Inhibitors
authors N.O.Concha, P.A.Elkins, A.Smallwood, P.Ward
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A, B, C, D, E, F
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cow
Organism_taxid: 9913
Gene: Pka, Prkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Ai)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14

Molecule: Camp-Dependent Protein Kinase Inhibitor Peptide
Chain: G, H, I, J, K, L
Synonym: Pki-Alpha, Pki Inhibitor Peptide
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. It S Is Found Naturally In Bovine.
symmetry Space Group: P 1 21 1
R_factor 0.264 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.460 96.392 180.036 90.00 102.66 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand G96, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceAminofurazans as potent inhibitors of AKT kinase., Rouse MB, Seefeld MA, Leber JD, McNulty KC, Sun L, Miller WH, Zhang S, Minthorn EA, Concha NO, Choudhry AE, Schaber MD, Heerding DA, Bioorg Med Chem Lett. 2009 Mar 1;19(5):1508-11. Epub 2009 Jan 9. PMID:19179070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (3e8c.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (3e8c.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (3e8c.pdb3.gz) 66 Kb
  • Biological Unit Coordinates (3e8c.pdb4.gz) 66 Kb
  • Biological Unit Coordinates (3e8c.pdb5.gz) 65 Kb
  • Biological Unit Coordinates (3e8c.pdb6.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3E8C
  • CSU: Contacts of Structural Units for 3E8C
  • Likely Quarternary Molecular Structure file(s) for 3E8C
  • Structure Factors (4627 Kb)
  • Retrieve 3E8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E8C from S2C, [Save to disk]
  • Re-refined 3e8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E8C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E8C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e8c_E] [3e8c_B] [3e8c_I] [3e8c_G] [3e8c_K] [3e8c_L] [3e8c_C] [3e8c] [3e8c_J] [3e8c_D] [3e8c_A] [3e8c_H] [3e8c_F]
  • SWISS-PROT database: [Q3SX13] [P00517]
  • Domain organization of [IPKA_BOVIN] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 3E8C: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3E8C
  • Community annotation for 3E8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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