3F5N Hydrolase Inhibitor date Nov 04, 2008
title Structure Of Native Human Neuroserpin
authors S.Ricagno, S.Caccia, G.Sorrentino, M.Bolognesi
compound source
Molecule: Neuroserpin
Chain: A, B, C, D, E
Synonym: Serpin I1, Protease Inhibitor 12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpini1, Pi12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) Plys
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.234 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.796 179.176 248.263 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceHuman neuroserpin: structure and time-dependent inhibition., Ricagno S, Caccia S, Sorrentino G, Antonini G, Bolognesi M, J Mol Biol. 2009 Apr 24;388(1):109-21. Epub 2009 Mar 2. PMID:19265707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (3f5n.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3f5n.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (3f5n.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (3f5n.pdb4.gz) 61 Kb
  • Biological Unit Coordinates (3f5n.pdb5.gz) 58 Kb
  • CSU: Contacts of Structural Units for 3F5N
  • Likely Quarternary Molecular Structure file(s) for 3F5N
  • Structure Factors (1053 Kb)
  • Retrieve 3F5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F5N from S2C, [Save to disk]
  • Re-refined 3f5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F5N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F5N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f5n_B] [3f5n_E] [3f5n_C] [3f5n_D] [3f5n] [3f5n_A]
  • SWISS-PROT database: [Q99574]
  • Domain organization of [NEUS_HUMAN] by SWISSPFAM
  • Domain found in 3F5N: [SERPIN ] by SMART
    • Other resources with information on 3F5N
  • Community annotation for 3F5N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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