3G05	Rna Binding Protein	date	Jan 27, 2009
title	Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli Mnm
authors	R.Shi, A.Matte, M.Cygler, Montreal-Kingston Bacterial Structura Genomics Initiative (Bsgi)
compound		source
Molecule: Trna Uridine 5-Carboxymethylaminomethyl Modificat Mnmg; Chain: A, B Fragment: N-Terminal Domain: Unp Residues 2-550 Synonym: Glucose-Inhibited Division Protein A Engineered: Yes		Organism_scientific: Escherichia Coli O157:H7 Edl933 Organism_taxid: 155864 Strain: O157:H7 Edl933 Ehec Atcc: 700927 Gene: Ecs4683, Gida, Mnmg, Z5241 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 31 2 1	R_factor 0.227 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.593 144.593 271.019 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.49 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-function analysis of E. coli MnmG (GidA), a highly-conserved tRNA-modifying enzyme., Shi R, Villarroya M, Ruiz-Partida R, Li Y, Proteau A, Prado S, Moukadiri I, Benitez-Paez A, Lomas R, Wagner J, Matte A, Velazquez-Campoy A, Armengod ME, Cygler M, J Bacteriol. 2009 Oct 2. PMID:19801413

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (3g05.pdb1.gz) 161 Kb LPC: Ligand-Protein Contacts for 3G05 CSU: Contacts of Structural Units for 3G05 Structure Factors (329 Kb) Retrieve 3G05 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G05 from S2C, [Save to disk] Re-refined 3g05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G05 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G05

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G05, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g05_A] [3g05] [3g05_B] SWISS-PROT database: [Q8XAY0] Domain organization of [MNMG_ECO57] by SWISSPFAM

Other resources with information on 3G05

Community annotation for 3G05 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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