3GML		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, C6Q, EDO, FUC, MAN, NAG, PLM	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands., Schiefner A, Fujio M, Wu D, Wong CH, Wilson IA, J Mol Biol. 2009 Nov 20;394(1):71-82. Epub 2009 Sep 2. PMID:19732779

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (3gml.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 3GML CSU: Contacts of Structural Units for 3GML Structure Factors (662 Kb) Retrieve 3GML in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GML from S2C, [Save to disk] Re-refined 3gml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GML in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gml] [3gml_A] [3gml_B] SWISS-PROT database: [P01887] [P11609] Domain found in 3GML: [IGc1 ] by SMART

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