3GYP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BME, CL enzyme
Primary referenceStructural analysis of Rtt106p reveals a DNA binding role required for heterochromatin silencing., Liu Y, Huang H, Zhou BO, Wang SS, Hu Y, Li X, Liu J, Zang J, Niu L, Wu J, Zhou JQ, Teng M, Shi Y, J Biol Chem. 2010 Feb 5;285(6):4251-62. Epub 2009 Dec 10. PMID:20007951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3gyp.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3GYP
  • CSU: Contacts of Structural Units for 3GYP
  • Structure Factors (151 Kb)
  • Retrieve 3GYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GYP from S2C, [Save to disk]
  • Re-refined 3gyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gyp] [3gyp_A]
  • SWISS-PROT database: [P40161]
  • Domain found in 3GYP: [Rtt106 ] by SMART

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