3H86	Transferase	date	Apr 28, 2009
title	Crystal Structure Of Adenylate Kinase From Methanococcus Mar
authors	D.G.Milya, S.Yousif
compound		source
Molecule: Adenylate Kinase Chain: B, A, C, G Synonym: Ak, Atp-Amp Transphosphorylase Ec: 2.7.4.3 Engineered: Yes		Organism_scientific: Methanococcus Maripaludis Organism_taxid: 39152 Strain: Atcc 43000d Gene: Adk, Adka, Mmp1031 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: H 3	R_factor 0.183 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.840 102.840 228.720 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	AP5	enzyme	Transferase E.C.2.7.4.3 BRENDA
Gene Ontology	Chain Function Process Component A, C, G, B adenylate kinase activity
Primary reference	Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability., Davlieva M, Shamoo Y, Proteins. 2009 Jul 20. PMID:19731371

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (3h86.pdb1.gz) 92 Kb Biological Unit Coordinates (3h86.pdb2.gz) 92 Kb Biological Unit Coordinates (3h86.pdb3.gz) 361 Kb LPC: Ligand-Protein Contacts for 3H86 CSU: Contacts of Structural Units for 3H86 Structure Factors (247 Kb) Retrieve 3H86 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H86 from S2C, [Save to disk] Re-refined 3h86 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H86 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H86

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H86, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h86_B] [3h86_A] [3h86_G] [3h86_C] [3h86] SWISS-PROT database: [Q6LYG0] Domain organization of [KADA_METMP] by SWISSPFAM

Other resources with information on 3H86

Community annotation for 3H86 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Adenylate Kinase (the movie) Images from IMB Jena Image Library of Biological Macromolecules.

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