3H9M Lyase date Apr 30, 2009
title Crystal Structure Of Para-Aminobenzoate Synthetase, Componen Cytophaga Hutchinsonii
authors P.Sampathkumar, S.Atwell, S.Wasserman, J.Do, K.Bain, M.Rutter, T.G J.M.Sauder, S.K.Burley, New York Sgx Research Center For Stru Genomics (Nysgxrc)
compound source
Molecule: P-Aminobenzoate Synthetase, Component I
Chain: A
Fragment: Residues 2 To 426
Ec: 4.1.3.-
Engineered: Yes
Organism_scientific: Cytophaga Hutchinsonii Atcc 33406
Organism_taxid: 269798
Gene: Chu_1808, Pabb, Yp_678417.1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc); Modified Pet26b
symmetry Space Group: C 2 2 21
R_factor 0.173 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.006 159.497 115.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.57 Å
ligand DTU, MSE, PGE enzyme Lyase E.C.4.1.3 BRENDA
note 3H9M is a representative structure
Gene CHU ; YP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3h9m.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3H9M
  • CSU: Contacts of Structural Units for 3H9M
  • Likely Quarternary Molecular Structure file(s) for 3H9M
  • Structure Factors (4077 Kb)
  • Retrieve 3H9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H9M from S2C, [Save to disk]
  • Re-refined 3h9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H9M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H9M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h9m_A] [3h9m]
  • SWISS-PROT database: [Q11U39]
  • Domain organization of [Q11U39_CYTH3] by SWISSPFAM
  • Other resources with information on 3H9M
  • Community annotation for 3H9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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