3HDB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2PE, CA, CL, NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the autolysis of AaHIV suggests a novel target recognizing model for ADAM/reprolysin family proteins., Zhu Z, Gao Y, Zhu Z, Yu Y, Zhang X, Zang J, Teng M, Niu L, Biochem Biophys Res Commun. 2009 Aug 14;386(1):159-64. Epub 2009 Jun 6. PMID:19505434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3hdb.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (3hdb.pdb2.gz) 141 Kb
  • Biological Unit Coordinates (3hdb.pdb3.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3HDB
  • CSU: Contacts of Structural Units for 3HDB
  • Structure Factors (468 Kb)
  • Retrieve 3HDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HDB from S2C, [Save to disk]
  • Re-refined 3hdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hdb] [3hdb_A] [3hdb_L]
  • SWISS-PROT database:
  • Domains found in 3HDB: [ACR] [DISIN ] by SMART

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